Geninter is an algorithm capable of reliably and efficiently analyzing combinatorial survival effects of multiparametric data. Originally developed for analyzing survival differences between combinatorial genotypes of SNP pairs in breast cancer, the geninter algorithm can be utilized in any similar case. The algorithm is implemented in R and Fortran90/MPI.

The geninter analysis pipeline

Download

The source codes will be made available upon submission of the paper.

Documentation

The next documents and pages will help you install and use Geninter. Geninter makes use of the Anduril component framework. For Anduril documentation, please refer to the
Anduril website.

Publications

Requirements

Geninter R bundle is not an independent program and has be to executed within the Anduril component framework engine.

The Fortran 90 version of the Geninter algorithm has been developed for the computer environment available at CSC - IT Center for Science computer cluster. It utilizes the Message Passing Interface to divide the computational burden among computing nodes.

Related sites

License

Geninter is available under the GNU General Public License.

Web site copyright Systems Biology Laboratory, University of Helsinki.
Geninter copyright © 2008-2013 Riku Louhimo.