Overview Analysis of the glioblastoma multiforme dataset introduced in The Cancer Genome Atlas Research Network, Nature 2008 455:1061-1068. The following microarray platforms are analyzed: gene (Affymetrix U133A), exon (Affymetrix Human Exon 1.0) and miRNA expression; SNP (Affymetrix); Array CGH (Agilent 244A); DNA methylation. In expression microarrays, solid tumors are compared to brain tissue from healthy controls. Array CGH compares solid tumors with reference blood. SNP analysis uses blood samples from patients.
Note The functional version of this website was taken down 2020/01/15. You can run the queries yourself by downloading the data, and running a light weight web server at your own computer.
  • Download the data [165 Mb, 2.9 Gb extracted]
  • Extract the data
  • Start a web server in the extracted folder:
    • On Linux and MacOS hosts:
      $ python3 -m http.server
    • On Windows:
      • Install Python and use the same command as previous, or
      • Install a light weight web server, like Uniformserver.com, Mongoose, or some other
  • Point your browser to http://localhost:8000 (you may need to check the port number if you installed any other web server than Python)