phoMSVal is an open-source platform developed for managing MS/MS data and automatically validating identified phosphopeptides.

phoMSVal imports data into a MySQL relational database, extracts features for classification, and assigns a classification label to each spectrum designating whether the given peptide assignment is likely to be correct. The classifier used is a random forest classifier with an input of ten features calculated from the spectra.

Web site copyright Computational Systems Biology Laboratory, University of Helsinki.